NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068489_100194

Scaffold Ga0068489_100194


Overview

Basic Information
Taxon OID3300006841 Open in IMG/M
Scaffold IDGa0068489_100194 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7971
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041251Metagenome / Metatranscriptome160Y
F049037Metagenome / Metatranscriptome147N
F049924Metagenome / Metatranscriptome146N
F060975Metagenome / Metatranscriptome132N
F097503Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0068489_10019410F060975AGGAGMGKTIRRNPVARNSEKFNKPKTIRDRKKDFYRPDSKRDLEEAIEDLSFDEDNRKDAIIIQYQDDLARSQEDGWPYED*
Ga0068489_10019411F097503AGGAGLAIRGLDMDCDTFDGIVEMFEQRMMEGCIANEFKCTYNIEKGEFIAEIDGKYYVAMTREKK*
Ga0068489_10019415F041251N/AMKEYQIQDMTEIAEAIKSGDPAENDIGTVKDGFFWFPDEMAWATQWQKDKEQDSPDGYFAMLLNPDIFEDEEDDEEIMAGIEYWWHRSQIYSAAYLINNKPLVASRYTEDIAADSLRDLLRMQNEVKESFAEKGIKVGIDAKPKDIWMVIRTTAQNIHDNVRGIH*
Ga0068489_1001948F049924GAGMRKYATQRLIAKDVPVHLKGLFEGQNLRFRGRGSRKRAVDIVMNSKKLRDKYGTNGLLARFNQDLPLEFADRMSVYCR*
Ga0068489_1001949F049037GGAGMTESPCDTCHNYWLCMEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLRTFPLIEDPLGFYFIRHIDGTIENTYTGKSSKRLRNAQAACREVVLEAKVRESTARTQNNVGRVVQREMGRNLARVCEQEDPGES*
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