NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068489_101592

Scaffold Ga0068489_101592


Overview

Basic Information
Taxon OID3300006841 Open in IMG/M
Scaffold IDGa0068489_101592 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4023
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aestuariivita → unclassified Aestuariivita → Aestuariivita sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049037Metagenome / Metatranscriptome147N
F049696Metagenome / Metatranscriptome146N
F049924Metagenome / Metatranscriptome146N
F060975Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0068489_10159210F049037GGAGMSESPCDTCHNYWICVEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPQTITVRELSERCGFGKETNKLKHWLGLRVFPLIEDPLGFYFLRHLDGAIESTYTGKSSKRLRNAQAACREVVLEAKVRESTARAQNNVGRVVQREMGRNVAAIRGDEDQGEN*
Ga0068489_10159211F060975AGGAGMGKTIRRNPVAKNSEQFNKPKTIRDKKKDFYRPDSKRDLEEAIEDLSFDEDNRKDAIIIQYQDDLARSQEDGWPYED*
Ga0068489_1015924F049696GGAGMTGVRPVPMKIHTQKGKRRLWLEEQRYGLDGFECGSNFKVTYNADSIEIESDPEGSNKVFTRVKKPSKLHPTERRFAIVSLHNSKLKAIFGDTEDGVDTFCRYEQMPGYLKIWPMDKVESFAEELAEGIEQQLAA*
Ga0068489_1015929F049924GAGMRKYATQRLIAKDVPVHLKNLFEGQNLRFRGRGSRVKAVETVMKSKKLREKYLWEGWKEMPLPKVMRGLTYRFNQDLPLEFADRMSVYCR*
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