NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068489_105904

Scaffold Ga0068489_105904


Overview

Basic Information
Taxon OID3300006841 Open in IMG/M
Scaffold IDGa0068489_105904 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)926
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023368Metagenome / Metatranscriptome210Y
F058216Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0068489_1059042F058216GGAGMNKTIGQLIKENHWSTRRLAVAMNITQADLKGVKWEKSNKPYKKLKKKSYLW*
Ga0068489_1059044F023368N/ARATTKYKDVPNAEKFMVALDKLETNEADSLSMLLSNLSMPQMCCSWVSEEHFNNLLEKYKIDLTPYVKDDTRITNSIKSEISDELFNLIDSDEYKKRNLIKALRLKFPDVNSGVICRLIKKYLSLRILEIDRTYKTKPFVIKGKYYVGGQ*

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