NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075428_100333816

Scaffold Ga0075428_100333816


Overview

Basic Information
Taxon OID3300006844 Open in IMG/M
Scaffold IDGa0075428_100333816 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1628
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000242Metagenome / Metatranscriptome1480Y
F004704Metagenome427Y
F011456Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0075428_1003338161F011456AGGAGGMKPLMPAALLIALSTVALAKPTPIELPTALVDAVVMNMASGGSVQENTGSIGAMREREYFEAPQSPLKAFPCL
Ga0075428_1003338162F000242GGAGGMCWEIDYKLFAELEKARETRTKQEQRAGVIDSLLNEANKQSDKANVEGTTVKEVAPAK*
Ga0075428_1003338163F004704GAGGMSERRFALVDFTYRGKTGLFRFHEAGRTYALPQAVAYAAIKRGLVAKQRPPHWTPPSIFRPPEVLTEVEVTEAEAELKALQRHALEVVDPEN*
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