NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075421_100000409

Scaffold Ga0075421_100000409


Overview

Basic Information
Taxon OID3300006845 Open in IMG/M
Scaffold IDGa0075421_100000409 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44555
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (62.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F101835Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0075421_10000040920F002324GGAGGMGEIRLFQICYEGDLTVEVSHVLRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRAQLGADARLLVACSQFTTMRDFLLVRHSLTPGADYSELHDALQRLGTVVALPFESTFVIQSLYANEIRTDVHTLGLALGELCPDESLMVTGISHDWAYSDSGVSRMFIGDAYEEAQFKSF*
Ga0075421_10000040927F101835GGAGGMSEGCGFEAAVLRAAQDDRWTDSLRNHLLECEDCVATASVAPWMTRFARISDRERKLPDPQIVWLKAQLLQGSADVARVSRPLNFLQLVAYLVVAGGWAALLTWKWDMVQAWVKGLTPTGMVQNMATGQSLSMSFLALLIVLATMTVSLAMHTILAEE*
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