Scaffold Ga0075430_100199804

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075430_100199804

Scaffold Ga0075430_100199804

Overview

Basic Information
Taxon OID	3300006846 Open in IMG/M
Scaffold ID	Ga0075430_100199804 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1660
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8443	Long. (^o)	-83.9607	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001751	Metagenome / Metatranscriptome	642	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075430_1001998042	F001751	AGGAGG	VLEMTNENFARLLRGLTIAVGNRRNRILLYRFLAAEIRALHCSYGVGDGESYKRALTFLENCERYTLRSLVRRSAKHHAEMTVDHAKRVFLRALKKLDTSQEDNPTLRAMIVHLLQEEPLQTGNT*

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