NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075433_10123566

Scaffold Ga0075433_10123566


Overview

Basic Information
Taxon OID3300006852 Open in IMG/M
Scaffold IDGa0075433_10123566 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2299
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043860Metagenome155Y
F083969Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0075433_101235661F083969N/AMKLCWVFLLAEIAACSGKVALRHRPRRDAVHHYVLTMRHSRDDAPIVAVARTEQVWTIYFTQLARFTDRRGAGSEISLQIDSAQVQPSAADLSALNGATILAFFDGRGQLQRTEPDTAPGMLRAIAAVMAPWFPAEPVEPGDGW
Ga0075433_101235662F043860GAGMNSRHAAVAALAVAACGGGGPKVALRFHPPAGAVYHYALEQRTRISMQSGPLAALDTQHLFMRVRFTQTVKGPTDGGTELDVVFESMEAEIPGVSPDVIARELAKISGLRSTLVYDETGRVVRSSFAPAPGVDPNLTKQMASGVQVMTFGFPDHPVGKGDSWTITADLPLPPVAGANTTKPSPAKTTLTIREIRTTGADTSVVIDMKTRFPSEPIPLNTGAQAATVRLDGDLTGHQEFSISRGTFLNGTIKGSTKMHVTNALLGAKGMDMVTDTESSIFLLP*
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