NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075425_100000375

Scaffold Ga0075425_100000375


Overview

Basic Information
Taxon OID3300006854 Open in IMG/M
Scaffold IDGa0075425_100000375 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41108
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (80.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002416Metagenome561Y
F009773Metagenome313Y
F035446Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0075425_10000037521F009773GGAGGMRARPVRPNIYLPVVRFGVADSDWFSVLLISCAGYLAPIPFGLTVLYVPLQMWTWLLATAGSIAFFNYIRIGRKPRWLPHRLKALVHHHRHNRAIPNGRKTFNRPWLIDSESYDGEIEVAERSTSTRFLFEQHGIFQEACDEKWNALLLTTS*
Ga0075425_10000037522F002416AGGAGMKNSIEWNQFPELDQSRAVRIGRRLMTIALAVKTLNGPIAAALMLLVGVASVSAQTPTGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAIGIVTSGLRESLSTWKFITGAACFAFGGVCAAIYAFSQGDSVPLDNTF*
Ga0075425_10000037528F035446AGGCGGMRERGNIWPVISVAAGAFFVLVVMPLILHRQKTGEMATVDAQVTIGDGASESASRPNSSAHRWPDGEVPRTAERLRDVTAVAIAASANVVEGAMTGRLPRDVNTILNDTSRRKLIPSEWLTSEPGVLQMPQGTVHLRYLPKESSIELISMPSERNDGPAILIRIPDTENTSVGIRYFESMQLDGIIYPPPFAPIAQIIASGWQPKPFKQTQIPDEQRVQLEQWARTISLKQQK*
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