NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075425_100157058

Scaffold Ga0075425_100157058


Overview

Basic Information
Taxon OID3300006854 Open in IMG/M
Scaffold IDGa0075425_100157058 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2608
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0075425_1001570584F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTILLPYANSAYRKVQRALGNAGGGGSIQDDVLLVVPAVAQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLIRNAQEAIAYATAAMAAWARGSPLAEKWDDAASDAIEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0075425_1001570585F070523AGGAVKKEKISLLPDERVAMHAKLGSILKGGDAAEILLVIILLLALRPPSRRKAPKKKRQPKRLP*
Ga0075425_1001570586F000739GAGMTRIELWLKGLFAAAISGGAGGILTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPQDGV*
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