NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098066_1004114

Scaffold Ga0098066_1004114


Overview

Basic Information
Taxon OID3300006856 Open in IMG/M
Scaffold IDGa0098066_1004114 Open in IMG/M
Source Dataset NameMarine viral communities from Cariaco Basin, Caribbean Sea - 25B_WHOI_OMZ_CsCl
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2915
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)Depth (m)247
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021867Metagenome217N
F056907Metagenome137N
F074138Metagenome120N
F087314Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0098066_10041143F087314AGGAGMAFEHKENTATVFTNDKKTADNQPDFTGRGKVGDTLMDFAMWKRQSKSGNTYYYMSFKEPSEKFGSKGKTKPAF*
Ga0098066_10041146F074138AGGAGLINWNKLYIHPSNNTTDEDIMDFIEWVSRKAERLGFRVELKRHEKSGSGSAEAISHNPLDKSDETY*
Ga0098066_10041147F056907N/AVPDNAYYIPNESSGGPKLPSGEHKAIIVALDVSENIKCGGFIADIFKPVYRVVDSEYANADVKDNGIFRYKDKPGYDFQAGRNWGFAKFCTILGLDKKQDGKITLPYLEIDMIDGVKVLIEVSYKSFVNDTGKPVRYPVALLKEKLGDVPF*
Ga0098066_10041148F021867N/ALKPSELGRIEAFVGYVMDGVENDSTVIEAPVSRLMPSEECKQVIKTETEGSKAFVKAMVHIDSEGLKEKDLDRVLSALDNGKITMDNLQDSLDRIASIKKSYK*
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