Basic Information | |
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Taxon OID | 3300006858 Open in IMG/M |
Scaffold ID | Ga0079048_1003528 Open in IMG/M |
Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2562 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Yellowstone National Park | |||||||
Coordinates | Lat. (o) | 44.733 | Long. (o) | -110.709 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008949 | Metagenome / Metatranscriptome | 325 | Y |
F011097 | Metagenome / Metatranscriptome | 295 | Y |
F045200 | Metagenome / Metatranscriptome | 153 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0079048_10035281 | F008949 | AGGAGG | LSSQTVTLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPTNQTIDVKFICNKYKQVAVPRTDPLSPPVFQTVQKTI |
Ga0079048_10035282 | F011097 | N/A | VIKIIRDVPLYTSGGTDPFTSFYSLPTGGSPITANGSNYQVLRFHPNYARLHIYITSLSGTSPSIQFTVGSYFGANYYTLPPITSPQYVYVVGNENKTIITYLNTSNAVLQQVELPYNIFFNGCYVSWSVSGTSPSISAYIHFEFEDEEESED* |
Ga0079048_10035283 | F045200 | N/A | VIDNPFFFVPGHYPGGLSPTGAPEDRTYLLWFGSPKGTTSENPLFSVFYARVHPERYVPNAPASTWLDPPVLLVSYDQISNDVVNWADNVFTAAGYTPSSSGVVNVPNNVYVANYGYVNYHGAPSTVTLNFTGTPELKQLHMVYDMLDDTVLMYFSIVVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDSTVEQTIGNALVSFIWGNTLQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPVYMVHYNYPHGNSLMAIAFADIHKNPAQPQIYYQPIITNYGYSFPAFGGTQLPENLGSCPSSYGGNTYYCIPILGFAGLLDTFDLGLNIDKFGSIVPGESFGIHGTYAIPITLPPRPDWGGISSMRMKVLYIAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYLDKSAISPKGKTLVTVPPLIFGQTSPGGSYYVISGYNSFNTIYRGVVAHTFGKKYARVYLNINAINAGFVNIYTRYRSRSAPDLQQMYGNSPSSNSTYQPVLEGNFGTLVYATDYSYNMPYYLGYSRTSKFRVDGQVLWVNIRQSSSPAFIELEGD* |
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