NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066797_1000045

Scaffold Ga0066797_1000045


Overview

Basic Information
Taxon OID3300006864 Open in IMG/M
Scaffold IDGa0066797_1000045 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35064
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (70.97%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6135Long. (o)-149.3144Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064982Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0066797_100004526F064982N/AMAFLIWRVSRGGRISRALLMIGSCTSLAVSALAIARVWDVSVVALVTISAAQIALLVSPPVYGRTRPTPIAVRARGWTQFVRQPPTWLLACGLLAGMVVTLACLGSMDFVALPGCRPAASDACSALVEGYPLRWLTAHQNVPLIFKGALLKDCVQWALVSTSVLYLGWLWLTAPDDPSEKAIHPNS*

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