NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075477_10199556

Scaffold Ga0075477_10199556


Overview

Basic Information
Taxon OID3300006869 Open in IMG/M
Scaffold IDGa0075477_10199556 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)819
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004131Metagenome451Y
F021100Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0075477_101995561F004131N/AMRATRTTVVADVSQFPFNVMRRQLITPLVREAAELLWPAEQRRVTVLLRAPEYWDECEKADLEASEELA
Ga0075477_101995562F021100AGGMNDEQRIAQAAMAIAGCIFEDCNETWLTAKLHVCIAWRNQGTDGGLTQADRDGLRLLLDAATDISSKLCNSETGEAIRTATVEEVCESVLAGPEGHIMVDGVRCYVEL*

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