NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075434_100145303

Scaffold Ga0075434_100145303


Overview

Basic Information
Taxon OID3300006871 Open in IMG/M
Scaffold IDGa0075434_100145303 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2392
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005013Metagenome / Metatranscriptome415Y
F029869Metagenome / Metatranscriptome187Y
F070951Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0075434_1001453031F029869AGGAGMRDPAGRIALGITDDQVALGSHLIHFWQNEEEFEHGVRFLELGIDNESEYCVLFGHDEANQRVLQVLRKKCPDLDGAIQEGRLVILRREVSASETLANIEAAFAAAVSKG
Ga0075434_1001453032F070951GAGMSSKHVSEMTRISCAAPSTRRSVQFLAQLYIHALALVILVVFSRNVFSTAIRTTLLALLR
Ga0075434_1001453034F005013GGAGGMTTNNARGAFLRSYHLPAILLHYPRLVRAMQGIAMLNGMEAAACIRDLKAGRRWSSEAVNRYGGTHKVAAEAWKYRRAISLFARSVG*
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