NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075434_101188818

Scaffold Ga0075434_101188818


Overview

Basic Information
Taxon OID3300006871 Open in IMG/M
Scaffold IDGa0075434_101188818 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)775
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia → Georgenia soli(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020474Metagenome224Y
F029292Metagenome189N
F033381Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0075434_1011888181F029292N/AIRARWTMDGATSLAEGAQRFRDRACALEHLAEAGFELDQAAANGFAIAIRPGEKSPMRLIETDRATGKRVPM*
Ga0075434_1011888182F033381AGGAGGMEEGWRAIVDGQWLRDCMEEWRDYGHLVLRAKWTMDGATTLAEAAARFRERASELDELARAGFELEQPVTDDNCEAAERRTARSEHYAFVVRPGEESPMRLVEEDE*
Ga0075434_1011888183F020474AGGAGGVSQEDTQDIEVGEPIYECPDCGSLTIRGKWSIEGARSLTEAAAKLRDYAHELEHMRASGLELASPVEADYGIVRPGG
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