NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101947_1005767

Scaffold Ga0101947_1005767


Overview

Basic Information
Taxon OID3300006872 Open in IMG/M
Scaffold IDGa0101947_1005767 Open in IMG/M
Source Dataset NameBiofilm microbial communities from drinking water pipes in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12930
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Drinking Water Pipes → Biofilm Microbial Communities From Drinking Water Pipes In Singapore

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3Long. (o)103.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091546Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0101947_100576710F091546GAGMRTYAQYRRAYDETLARLTMEYDTLSLQEKSRRVLGRDNPLLYSSRAVAEKLGGSSLSQRALERGLGRQTPQFESIAYHMLVHVPLRRVALPDARWIFLDFSGQTGGWRYQRAEAVRKFCEAIAGKSPDLECRFLSGGVATAELLDRLLWEEFSRPDSSFRTTARHIHCRFQLWVAQTRGEIPHGACVQIV*

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