NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073928_10000003

Scaffold Ga0073928_10000003


Overview

Basic Information
Taxon OID3300006893 Open in IMG/M
Scaffold IDGa0073928_10000003 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745438
Total Scaffold Genes676 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)498 (73.67%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000078Metagenome / Metatranscriptome2550Y
F000136Metagenome / Metatranscriptome1961Y
F000309Metagenome / Metatranscriptome1327Y
F000414Metagenome / Metatranscriptome1169Y
F001348Metagenome / Metatranscriptome717Y
F001829Metagenome / Metatranscriptome629Y
F002075Metagenome / Metatranscriptome596Y
F005402Metagenome / Metatranscriptome402Y
F006274Metagenome / Metatranscriptome377Y
F006802Metagenome / Metatranscriptome364Y
F009346Metagenome / Metatranscriptome319Y
F012132Metagenome / Metatranscriptome283Y
F017614Metagenome / Metatranscriptome239Y
F033530Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0073928_10000003174F002075GAGGMSNHNPPAALLPRWRELYTAALFETDCKVIPNRIADAEKAIVVRARELFAAGGDSIEEDQALDDALYALRALQNCLDFRAAA*
Ga0073928_1000000324F012132AGGMFRSPRQCLNRALGLITLAALAMSPLSAAAQEKISGAGPGGVCSNLGQYIFVGGTGGFDALSHPALFEDLLPSGHVGLYEHGTAVAAAEGTTDAIREIEDAFAGTGGGQAELGQVGWNYFTLPPSYGYYKDVYLGHGLRPAEANIDTPQDWAPRDFLKKAVEVWRLYVNAGRTAGIETVAPIAGPNSASEPKLGDNVFATNAFYALERDEALYGKAIAFDVPPNFFLTGGSGPGYQKFIVQAIQWGNEHGLRTTVLLSPYPWPTNAQGQPVYFRQFTGNTFGSDTEKFVKILTAANAVPSEWAVDNYEDPYPEDAPAMVPETVANTTTAVALWLAQNAPVYVRGENGGVMCFPPAGTVQVTTPAGMLSGDGEPPKTLVR*
Ga0073928_10000003273F001348GGAVNQSQNVLGTVAIQLMNGDEVEIDGAKIRAKRVGSGRLRMVQFQANGRTLEAIEQNPEKPSRWGQLAREKHQVVQFRDVETGRYVAVSVDGKVTEYGT*
Ga0073928_1000000332F000136GAGGMAKSAKLKILYGEGDAEEQGAAAAAFEKAGHNVEKAVGRKAVQAALDKGGFDLLVLGPTLSRNDRHHLPYMAKKAHAEISVLVMHADGSRHPYVDACTDTGASIENVVARIDGMAIAGMMPAAAGAAAGR*
Ga0073928_10000003353F033530GAGMKTLKVSLIASLIGTAVGLGAWLFGFGRILWPAHPQLASFLLTLVTTVVIQIAWPRLTQPNSQ*
Ga0073928_10000003386F006274N/AMAAAYNMLMVDSGRQHDTSHKHQRHAIYATETSGLLLVAFLLLVLTLIRYWHTIHWSWR*
Ga0073928_10000003399F000414AGGAGMSAPSRRPEIRRRRTRHHKVASLRKRLASAQNDADRSRLTAKLHKLSVASPGQPLVK*
Ga0073928_10000003405F009346GAGGMSMSFEEALALASRDEGFKATVYAMNTLLIHKGIYTQQEFQDLFVEWVEKEQRRKAPAVRTAETSSAFSA*
Ga0073928_10000003493F017614GGAGMYLQPVVRCKNPDCPTPSAARIRLPYPNPPRSGETPPEWPKDGWQLRLICRDCDHWYVYEKGDVQWAPYTSPLADHSGLDFVCADLECAEPGCKSRTRWCVLDNSQMSESEMLEFVLRADPVVVCENGHAFGISGTASSSVSKPASV*
Ga0073928_10000003543F000078AGGAGLQSVRCLRCNREIEPGHKSVALYMFAQTVGIKPRQKSAAHRISFCPQCSVSLAMGPPPEGALNTAAWDMIRDLVGSDPALNQAAWETLSGVLGLLPATGTEGAPATTDPAGYFEF*
Ga0073928_10000003546F006802GGTGGVISLFMPLMLCITVVVSVGIGVLAAYVAVISILQACATVSQPRLVEARPRLVLVPTQNHVSGD*
Ga0073928_1000000368F005402GGGGGMKLKLDRIISIATLLASLAAIVLVLNKPAPVAQPQTPAAIAANAQSFDHKIGQLQQAAQPASPVSSSYQVSPTPDQPAQSSAQRKTEIHINSDEIGAVLAQAAGAAGTGDLSPDSNIGSGAPTIKDQHVSFEGDVVHGQFLTEIAGKDVWITVSGHLASKDGYATFEPTEFKVGDLNVPVSLVNPALQKKLLEQRDRMKLPDYVGDVKVQNGELIMQQK*
Ga0073928_1000000375F000042AGGAGMPNIKFVVRVSHRGTRAPAYVQRIDRMPVQMTINRKLALMMGKLTALDAVKAIQTAQCIPELVSVRVNG*
Ga0073928_1000000376F000309GAGMNPKENPNLDQILQCAVIVSWADLMHEAPSGLIHIEYAFAPAGTLDYLKVWSSLTRGHWLLACEYWMSESPFHGVGVRFDNGYESEGLSNILQRVMQHQASLVLPANLGRQGLLQISTPTEEERSAAAQRIHDTFDRLDIALIEPALA*
Ga0073928_1000000379F001829AGGAGMKKQYLHLSAYPCEVCAGPVVAGSLGVRENEISKETDIRLVGAICLSCGHRQGSAIAPARARHLPPMEWAAVDAVKASHLATAFVEALHRAELH*
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