Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000021 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	385309
Total Scaffold Genes	367 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	254 (69.21%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

385309

Total Scaffold Genes

367 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

254 (69.21%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000132	Metagenome / Metatranscriptome	1972	Y
F000508	Metagenome / Metatranscriptome	1069	Y
F002201	Metagenome / Metatranscriptome	584	Y
F003398	Metagenome / Metatranscriptome	489	Y
F006353	Metagenome / Metatranscriptome	375	Y
F009411	Metagenome / Metatranscriptome	318	Y
F017346	Metagenome / Metatranscriptome	241	Y
F019610	Metagenome / Metatranscriptome	228	Y
F054207	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000021125	F002201	GGA	MWINEVAPERLAELFHHYHEALAPEASGKGSEGRATWKEVSQQERSRLVAAARLALLELQAMAAERPKAHQYFARPGEAEWGC*
Ga0073928_10000021139	F054207	N/A	MPKRNLRVLKWMGMTPALAACTLCKREFKVPLESLKSVAGAQKYLQLQFTQHECEKAPDAPVG*
Ga0073928_10000021157	F000508	AGGGGG	MMMNKVVVASLQKEYSRLEAELGKIGKALSALGYSGGKKLRTAHVLSKEARARIAEAQRLRWAKVRKAAAKVEK*
Ga0073928_10000021166	F009411	AGGAG	LTKLNDEHNKHAGIARLISDLRTAKVELLSAQCATDRLRLQHSLDDIVSFGERQALQAAIASAGALCRFYNSIADQLKQADRQE*
Ga0073928_10000021198	F000132	AGGAG	MWIEKLADGVVQVQTPIGPRYLMPSFLQRVYFLWMFRHFPILPHAVLSRGQQRMIDRLCSQQRFVSMAYADGLEDAPVIGTVERRLAPGTESLPQRRPVAGETSAALPAEARQRG*
Ga0073928_1000002123	F019610	GAGG	MRAYLSRLTPKTFILLALPLLAIAYSVVTMVVPAVVHAVVPDVVRSVLSLI*
Ga0073928_1000002125	F017346	N/A	MGIFDSFRKDEVTGSKVLVCQLGTSFDEHLKSDLRVYKRFYPAASSATFTSVAELRGAVSHQYDILHLFCDVDNRGVIADASGDRITGSDLLSSAVASGVKLLWIGNDNPQEAYDAGFQTRGLKINVVLTLRRLGSNTSLFLDNLLGKMSAGEQLSKAWTAAQPAGKSVQPDVPHTVSSLGRGSVVLK*
Ga0073928_10000021289	F003398	GAGG	MTTSNPESALLSEVCAQVKRLGYAATKHVRLYGEDFQVVSDPFPEADGVAVHVTTKKDAKVRVLRLPATVTQSLKPRRRAA*
Ga0073928_1000002162	F006353	GGCGG	MRMRLLAGMILSVAVLPAQSGERPVYAESFRQGSTHVVEEKFEVRLTPQDPIYRERIKDSHGADRYALSIVPQGPEGDTTITSWQVKLADLHHRIYDNVLMASQTPSEEAGNNLWWLDPSNFAGVPISAKRIIKVEDFYVVLQVKARHLTPPDSPYLDSMTVAVELTNKDPRTAQESHSGNP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000021

Overview

Ecosystem & Geography

Associated Families

Sequences