Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000025 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	357518
Total Scaffold Genes	360 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	251 (69.72%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

357518

Total Scaffold Genes

360 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

251 (69.72%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F000801	Metagenome / Metatranscriptome	886	Y
F001709	Metagenome / Metatranscriptome	648	Y
F003117	Metagenome / Metatranscriptome	506	Y
F006150	Metagenome / Metatranscriptome	380	Y
F008825	Metagenome / Metatranscriptome	327	Y
F011862	Metagenome / Metatranscriptome	286	Y
F017681	Metagenome / Metatranscriptome	239	Y
F024747	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000002510	F000249	GGAGG	MRSLAWILAFSILMAIFCPAQSTPSTANSQPASSQPRMFFPSDMFWGWAQFDLAPPHNEIDPNLCAGNAGQYGGKQAPCSMFARYMLSGMLEVRPFGRSQLRRLMIFGAPSFLFGKNVPQTLYTWSPDAIGIEHSWGAGIFIAKGFEFRVTQHFLFDRLGARDTNLGIADLGNNGPWGRYMTVGVHKSFGTRRW*
Ga0073928_10000025158	F003117	N/A	MGAMPDRKLQIVRFIGSTPSTAYCDVCKLAFRTRREFLVDAEKARQQLQEDFAKHECKPEEGAVDEALAHIK*
Ga0073928_10000025267	F024747	N/A	MPSPSPRRPGERAPRARFWENTPAVLRSPRGFTRGKLQVISLTGGLLTLPKPLDHGTRVKLMFLTPKGSVFGAAEMLPQISWSLQPFKFTRLYDDDEGRLQATIQSSLGQRRRRHDEVERFRAW*
Ga0073928_10000025271	F006150	AGAAG	MKSAAGNHAGLRAAAVAGVMLWLMAAPLSFATGDEPTVDELKARIANASIADRPPLCIHVCERQVDMASRFYVAGDSDKAQAALTDVAAFAELARDYAIQSHKHEKQCEIAVRKMVRKLTDLEHAVSHEDEGTVKSTVERLERVRDDLLAAMFSKGNKK*
Ga0073928_10000025286	F011862	GGAGG	MMRASLFSAVLVLANVSSAQTLPATQSRPDPGRDSAIRIVEQIRRADYEGDRAALKRLHSELAPPVQDKILISRIDYWRGFALWRRAINGFNETPTPPDLAEDLNGAIVDFKDSLAQDPAFVESKIAEASSLGYLMFMNTKDQARVQQLMQQAGPLLKEAMASDPDNPRLLWVLGPVRWSSPPERGGGQDKAFDLYNRGLEIIRKRPANADPLEPSWGEPELLMNRAWSNLHRTVPDLKAAQKDAEAALLLVPYWHYVRDILIAQIQDAQAKAH*
Ga0073928_10000025339	F000801	GGAGG	MADKEWTVKELTEALKKFPLEAKVFYEMGPNGAGTIGKAQYVKARAEDNEFGVLLDR*
Ga0073928_10000025341	F017681	N/A	MSNFEHSGRLAKLHYVGVKTKELTPKQTLSVPCTTCGAAVGEACELHTGALRTEPHRDRKLSAAEAVEREAAKP*
Ga0073928_1000002557	F008825	GGAG	MDCVELQQSLAEVEDGSSLEQQAHLKMCPACTALVRELSLIVATAGQLQEADEPSPRVWNSIEIELRKEGLIRTPRAEHPFLPSFVARWGPARWLLPAAAMILLTVAIYERHQYESSLTTERASVALPATNLADLNDDDLMQEVEASAPAMKPQYVENLRRVNESIRDAQGLVDESPNDTDARRSLMDAYQQKAMLFEMAMDRSLP*
Ga0073928_100000259	F001709	AGAAG	MPQEISVSYQAIKSKVYRLIDALVVGEKTEVEVQESIRRWWELIHPADRPIAQKYLLIVLERSRSALDAVEAGLAEVTDHEVSRSSDAAKALKLVDRMVKQAAKPSGLGTTA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000025

Overview

Ecosystem & Geography

Associated Families

Sequences