Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000028 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	349409
Total Scaffold Genes	304 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	227 (74.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

349409

Total Scaffold Genes

304 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

227 (74.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000515	Metagenome / Metatranscriptome	1062	Y
F000655	Metagenome / Metatranscriptome	958	Y
F003240	Metagenome / Metatranscriptome	498	Y
F003629	Metagenome / Metatranscriptome	476	Y
F005712	Metagenome / Metatranscriptome	392	Y
F013787	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000028104	F013787	GGAGG	MSATGDAEFLRLLKKDIDYFTHAVEHFEDLIPRVCSSVQDQWRLQAQTRRNFAFELEILLDKAEQCVSTSVRAGKNGDQSSSASQ*
Ga0073928_10000028112	F000655	N/A	MIWWFLILGVSTLVVVCVAIALYMRLRRHLLAAHATHEGSSSEVGRETQTTDIEH*
Ga0073928_1000002812	F005712	AGGAG	MNTIRKFAYATVLTLSALNFSPSLASAQEAGGTFKLSHEVHWQNIVVPAGEYRFFIESNGPASRLTLRKLSGSGSGFVMLVSDTEESKPADTSRLVMVSRPGGSFVKQMQLPEFGVTLHFVVPEEAREVALATATTAASAAR*
Ga0073928_10000028120	F000515	N/A	MTHFPQPHPSRRAVRVQLGDVVLAAIRLEDGRHAKAKLQSISITGGLLQLPRSLAQGDFVEVAFQTQSGPVHGMAEILNPMRKTSEGVLQPFRFVALEDDDHRRLRTSLDHVSDSHLLGLKSSVFSVPRTI*
Ga0073928_10000028179	F003629	AGAAG	MKREPLLNRRVIFKLHGMDPLDSTILKQDATGYWIRGGTLALQLEPFNCSRPESDVRYLEFTRIEWLRAPRQRS*
Ga0073928_10000028218	F003240	N/A	VLTEEDKQWISDRLEKVETTLLSEFHKWASPVELRQRSHAAAIRALDTEVEALSDRLKNIEGR*
Ga0073928_10000028233	F000036	N/A	MGMDYKETFWMACDSTEQLRAEYGPFHTRVEAEAEARRLGFSYLLRYEHVLDENEEIQEVRCIFLELPGTVTAEVALISLHTRCATCGVSATHDKAWQAEVWADIHEFENSRHRVRLFEHARGKGLKEIAGWRG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000028

Overview

Ecosystem & Geography

Associated Families

Sequences