Basic Information | |
---|---|
Taxon OID | 3300006893 Open in IMG/M |
Scaffold ID | Ga0073928_10000028 Open in IMG/M |
Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 349409 |
Total Scaffold Genes | 304 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 227 (74.67%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Canada: Banff | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000036 | Metagenome / Metatranscriptome | 4352 | Y |
F000515 | Metagenome / Metatranscriptome | 1062 | Y |
F000655 | Metagenome / Metatranscriptome | 958 | Y |
F003240 | Metagenome / Metatranscriptome | 498 | Y |
F003629 | Metagenome / Metatranscriptome | 476 | Y |
F005712 | Metagenome / Metatranscriptome | 392 | Y |
F013787 | Metagenome / Metatranscriptome | 268 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0073928_10000028104 | F013787 | GGAGG | MSATGDAEFLRLLKKDIDYFTHAVEHFEDLIPRVCSSVQDQWRLQAQTRRNFAFELEILLDKAEQCVSTSVRAGKNGDQSSSASQ* |
Ga0073928_10000028112 | F000655 | N/A | MIWWFLILGVSTLVVVCVAIALYMRLRRHLLAAHATHEGSSSEVGRETQTTDIEH* |
Ga0073928_1000002812 | F005712 | AGGAG | MNTIRKFAYATVLTLSALNFSPSLASAQEAGGTFKLSHEVHWQNIVVPAGEYRFFIESNGPASRLTLRKLSGSGSGFVMLVSDTEESKPADTSRLVMVSRPGGSFVKQMQLPEFGVTLHFVVPEEAREVALATATTAASAAR* |
Ga0073928_10000028120 | F000515 | N/A | MTHFPQPHPSRRAVRVQLGDVVLAAIRLEDGRHAKAKLQSISITGGLLQLPRSLAQGDFVEVAFQTQSGPVHGMAEILNPMRKTSEGVLQPFRFVALEDDDHRRLRTSLDHVSDSHLLGLKSSVFSVPRTI* |
Ga0073928_10000028179 | F003629 | AGAAG | MKREPLLNRRVIFKLHGMDPLDSTILKQDATGYWIRGGTLALQLEPFNCSRPESDVRYLEFTRIEWLRAPRQRS* |
Ga0073928_10000028218 | F003240 | N/A | VLTEEDKQWISDRLEKVETTLLSEFHKWASPVELRQRSHAAAIRALDTEVEALSDRLKNIEGR* |
Ga0073928_10000028233 | F000036 | N/A | MGMDYKETFWMACDSTEQLRAEYGPFHTRVEAEAEARRLGFSYLLRYEHVLDENEEIQEVRCIFLELPGTVTAEVALISLHTRCATCGVSATHDKAWQAEVWADIHEFENSRHRVRLFEHARGKGLKEIAGWRG* |
⦗Top⦘ |