Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000074 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	223501
Total Scaffold Genes	213 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	142 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

223501

Total Scaffold Genes

213 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

142 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007640	Metagenome / Metatranscriptome	347	Y
F012297	Metagenome / Metatranscriptome	282	Y
F015941	Metagenome	251	Y
F027271	Metagenome / Metatranscriptome	195	Y
F032412	Metagenome / Metatranscriptome	180	Y
F083995	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000074117	F032412	AGGAGG	VAFTVYCWLLCLYPGSYRDEFGAEMTSVFRAARSELPPALPAKISFYQREFCGLLSGAMRARFDHLFGPAIPFGRFSMQPQFRFPRSTVFLMLVIFAGVVLTIRMASSVAGDKVGSVWPSLISVLVFMVLTMCAAAAVVCGILHTLRRSGVHRLENVDRRMYSGESNSDQ*
Ga0073928_1000007419	F007640	GGAGG	MIGRIANTVLRRSRQQARPPRKVCPFCFEREHIGGYYHIPNLIVEICQVHHALLTEERLAAGAEMKRQPHSIKSVEMALRSFAVTVRAFATALNKLCEGLEFCAEKLNLHDKQAQRRDQRHG*
Ga0073928_10000074203	F027271	GGAGG	MASDPERVKKLSVAGAFCLFDKKLSSSGSGSIVWGVLNALIGAIILNANNSWGFVTLLLGLALIAAGVYEKKVRDPKVIIISAATLGGLALWNFTLIGLAAIGKVHLALGGRTLYWGIAQAWGSYTTWQTYHTYKMLRETSDPATVEQVRGYIDELKKVRADESLDLVEFEMNAGFVQGRRLYRLKPTEDLYLIAQYKAQFRSLQLEGISFIPRNEVSLTPLGEKWMSKKIKATVQLGPLNLQNVTITPEMAMRINPAVRAVAMSAT*
Ga0073928_1000007450	F083995	GGAG	MMEPMVNSEVRELCKAVSQEEDSERLKSLLDELLTALDERQLVASLL*
Ga0073928_1000007478	F015941	GGAG	MKTNSKSKAFLALVLAIAIAATGCSAQWINIALQDLPVLTQMALNIATLVSALASGQQASTADIAVIQNISAQASRDLNLLQTLYGEYKATPSAPTLQKIQNVIADLNQNLPTLIQSAHISNPTLSARITAAVNLILTTVNSFAALMPQSSAATSRKAPTHSLLHANDLKKQWNQQVCSPSGNSALDAAFAAGVLR*
Ga0073928_1000007495	F012297	GGAGG	MKSMHYLYAAYIATWVIHGTYLTILVRKYSRVRKEMESLRK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000074

Overview

Ecosystem & Geography

Associated Families

Sequences