NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073928_10000172

Scaffold Ga0073928_10000172


Overview

Basic Information
Taxon OID3300006893 Open in IMG/M
Scaffold IDGa0073928_10000172 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)153912
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (59.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007243Metagenome / Metatranscriptome355Y
F027363Metagenome / Metatranscriptome195Y
F079016Metagenome / Metatranscriptome116Y
F087658Metagenome / Metatranscriptome110Y
F103623Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0073928_10000172133F027363AGGMSNTGTIKTLFENWLTDVRRRGAELYAENQADEVLYLSFEGKDQVRYSLRIDFDGQELTVQVNSPDLKSAKGESFLLNEESLRLLARRMCPLPEGQAVISVYLLARLAILCHAYQRLLAEYDREHHIQTTTNTIQEIEAELRQCLTPEEQQRTENPFLRPKGK*
Ga0073928_1000017221F103623AGGMSTNESVYPRWEREDRVSRFFIGPSLPIYQIEEIELIGGSMFLASESDKSNLVGQFESERNAKEACKRDFVDKNNDPATEPVGWGLNPRQKSR*
Ga0073928_1000017231F007243N/AVSHGEALIHRGEGLNSLLIMTSIHATILSAEKFRDLYRLIVQLVPSEFVGPFERLRFKKNPYCGSFGTSVDKSWLTLDYRKDPGFKAGEAFPLWRTD*
Ga0073928_1000017232F087658GAGMPPAHYFQITLEPHLKHSGLATGRKIIFLAEVPVKTAREASEAPEDDRMVYETAERLAANLTCMAMTGESAQPGEDEMRISFRSISGMSYDVMQRHPDAEKDGVRIWLIGARPE*
Ga0073928_1000017233F079016GAGMKPGRIETNSCAQELWGELIGIDDRTDQERTFTIYKRSGSLLVVSDTGCERLVGPDHGLSKTRIFQEVMYQFRVHAVRPNPSFCPVSD*
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