Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000174 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	152987
Total Scaffold Genes	154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (72.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

152987

Total Scaffold Genes

154 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

111 (72.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017357	Metagenome / Metatranscriptome	241	Y
F040221	Metagenome	162	N
F047233	Metagenome	150	Y
F049810	Metagenome	146	Y
F075185	Metagenome / Metatranscriptome	119	N
F091819	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000174102	F047233	GGA	LSAAGLNWLRGAAWTVFALDLVILFQMAYAAATGSAGGPTGQALLRGFTIMLASGLLGVAVVLIVSSWKRNAIGLWIALISAAIPLLWVGAGILGVGD*
Ga0073928_10000174146	F091819	AGGA	VRSANNLDPAQLRAVLPVADTDVFKALYYDREQAALRPNLTFIDPNGTIIFETNEVGLKGDPVDPQRKLAVAWGDSVVFGSGRGWACLIDRLAPGWQFLNGGLDGDPYSNILRRAGAFNRRYPVALNLVMLGWHHFVPAQLMTRAATRTRWFAWKHDPPQEIWLPHSGNENLRAELTSFLERTPNTAVLTTPTALNRQIIDRDLSSFLSSGNDETGFRFLGDIPYQIDAQRQGFEHITERNAIAREVCARMRVRLVDVFARFDTENAADFREHFYDVLHFRPRSYPLLTQFIYDQIKDLLR*
Ga0073928_1000017445	F040221	GGAGG	MSEPAIGIAGAVLLGLAILALIFGPRRSKGRFVDTGLAVGTGLLGLAIGLVVAEQVHQPSAISAAAAQPGPPPAPAASPGYVESRLSLQFPIDDANPIGSGQTNVADWYAFRNSIAYTPGTEEKTGKSQEEILKLLADVSWSWLIVVAFDQPTHYSRIDVNFTGGELPYYQITRQDPHYAVIHVQGRIPPGQMEIVASE*
Ga0073928_1000017446	F049810	GGAG	MDRTKWMRLSVRDLGDVVRWAAAQHAREIGEFRYRVVNGREIVSFRLVPRYAIDIGAREIIVVAYARMIGWRARLRELRRIAGALMRRAQEKAGIIAAAPSPLASLPPHRIAQLRPLAAAGQPRTQPL*
Ga0073928_100001745	F017357	AGG	MAVHGLYKATDGSWRQADANKGVPLLYKLKDHERWTLLDRDRAMVVHPNRPAKIVYPDGRVEEIASSPFPSCSRGHGGQ*
Ga0073928_1000017483	F075185	N/A	MAIKAVGMWRTAAHLGHQCKSHWGPLAGVLTGLMFVLVQLTTAHVGDSCTRLGQVAEEWRFGLPARQVMCIATTDGDLVYDRFVAPSRQAARQATTLIQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000174

Overview

Ecosystem & Geography

Associated Families

Sequences