Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10002668 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30015
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (62.86%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

30015

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (62.86%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F002750	Metagenome / Metatranscriptome	533	Y
F013395	Metagenome / Metatranscriptome	271	Y
F086235	Metagenome / Metatranscriptome	111	Y
F099605	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000266813	F002750	N/A	VHVRDFLQRLLQGRYVGLLEGEVTRLRAENRALTNSLLGIAGFPPVEYPEPAKPQPVARLRKRSWHQIQAWKEVEAGSNQVPK*
Ga0073928_1000266819	F013395	N/A	MRRALIGGALLLSSAAITARSKTESLLFVFLRVDREQDIAILRPMIAPDIGVQLDSGPRHLESGAVLTCEMLPREHEAIVEGQVAKLSEIVLDCGDHKFVVKTLDFRPQLK*
Ga0073928_1000266820	F000512	AGG	MIQILRETHDTPESVAHNLELAGGINRFREPNYRAVWGWNRLAWIGGKFEERDAATGSLLREVVELRQEPKYPAVNRWHIEKWLPPETYGSPRAWWAQTMEVEAGRSIPALGPYPARGEYEHCFTLEGPRGEFVQLTPTVAEHIARAIEWSRRHPRSAGKRALKDREQRQEQAYDAWAYDLLDEAVPAFHRQPFVTVA*
Ga0073928_1000266822	F000739	GGAG	MMTRIELWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGATFRIGLAAAMINAVIGVAAYLQKSPLPSGD*
Ga0073928_100026683	F086235	N/A	MQIASGISVLFTTLAFGHIMVHDTQHMMSHHEDNHFFIVAHTIIAIALGVLSLAGGFCLLTNRPRQNSN*
Ga0073928_1000266831	F000703	N/A	MLVREYRESDLAELRTIHAAQGFDYALPDLTNPLFVTKKIMANEGSVVGAALLRLTAEAYLLLDPRAGTPRQRWQWLLALHNATERDAWQRGLEDVHAWLPPPIANKFGKRLARLGWLRDDAWTPYCKKLAAHN*
Ga0073928_1000266832	F099605	GGAGG	MPNTTQSASWDFNPSDPVHLAATFSFDTEDTQDAAPVAAALAAIQARLASATVTATQPDGATISITVTI*
Ga0073928_1000266834	F000624	AGGA	MHNFGSAVVAGWLTTLVPVGLQFIVFLRWLHRRMRNDEITHAFVRDIATNHLPHIYNALQKIAAKQGIELDETPLVHFVDLNHRLKRRGD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10002668

Overview

Ecosystem & Geography

Associated Families

Sequences