Basic Information | |
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Taxon OID | 3300006893 Open in IMG/M |
Scaffold ID | Ga0073928_10019802 Open in IMG/M |
Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6977 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003216 | Metagenome / Metatranscriptome | 500 | Y |
F014401 | Metagenome / Metatranscriptome | 263 | Y |
F018222 | Metagenome / Metatranscriptome | 236 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0073928_100198022 | F018222 | AGG | MLYDPRKTWQYFAHAVIQENDPAKLTYLMQQLYRVLKDQEQPNLA* |
Ga0073928_100198023 | F014401 | GGAG | MKNGTLGLSHARVWVQFYKAALCELDASKVSDRIAEAERALVTRARELFHSAADNIEEGQAVDDAMYALHALQSSLKCTVNAKITSKDPA* |
Ga0073928_100198028 | F003216 | N/A | MTLKSAALLALIGTILMAALQLWTFVFTFLNVLRGLVPAEMLFSSFIYAFGSFSVALFFYVFHRGQ* |
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