Scaffold Ga0073928_10036441

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073928_10036441

Scaffold Ga0073928_10036441

Overview

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10036441 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4623
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001759	Metagenome / Metatranscriptome	640	Y
F002337	Metagenome / Metatranscriptome	569	Y
F008209	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_100364412	F002337	GGAG	MNLAIILVVGAAVALGVILRLTITRSLQAKGNSAATIRPIDVEAFRNLIDPAEDQYLRRHLPPTQFREVRRARLLAMAAYVQVAAGNAAVLVRVGESVLARGDPRFTEAAGQLVDDALLLRRNTTVALLRIYMALAWPNSPFAAGRVIDRYEQVSSSAMLLGRLQNPATAVRLSSRS*
Ga0073928_100364414	F008209	AGGAG	MKRTLLIIATVLMFLNTIVVPTVAHADGGSGGGNCSGSTGACRP*
Ga0073928_100364415	F001759	AGAAG	MTLKSALQDLRETTLAAVAGLLAKLAYLGSLRRREGGYKHWGLSLIHGEESSDRALKAAHTEVLSRVLRTPISDLREDLQQSSLADQQNAGTYIAGMRQQFKQLLPSPHDAVSERHLNSVLIALSKLEKNRKPATPSVS*

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