NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073928_10046780

Scaffold Ga0073928_10046780


Overview

Basic Information
Taxon OID3300006893 Open in IMG/M
Scaffold IDGa0073928_10046780 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3942
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F032938Metagenome / Metatranscriptome178Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F087282Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0073928_100467804F087282AGGAGMSKRVFVCVSGGVVDKVIVPPQTDGTWTVIDWDNIEADPAREWGHFDEEDKKYICENYPDGCAKYFLQFMRDMGGR*
Ga0073928_100467805F036810AGGAGMSLQLQQGTGVSARVRWLAFAASKRKAIQLSIERRAFERKLETIVRAANAHHSCGRSPGTVHFKLLRTCADELCADFAQRWNIPPELLEAQIPAITKLKSLADPPAKPNPAPLVGLGIVVAAATFLLLGVLGGLASVDYHLVGGR*
Ga0073928_100467807F045709GGAGGVTLTPSQKGSFLAGIGLWMLIWASVWKADDIAEAMCIQRWFNSNRCLRWIGQHKSTSLLATELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLVPFLEKLLSQKGTVTTALQ*
Ga0073928_100467808F014894AGGAMRMSIGIPGFSIYFDHHHVKPFIKDHSRKAKELFDELVVPVVLRGTCKALEVVANNTADAHDYLIGKLKTKQSA*
Ga0073928_100467809F032938AGGAGMQKYLVVSYDDDQQQWFWDCVAAKTAADAVAHVCERRPYVIAADAASPSQVQRIAKDLKSRPIARIIHQFDCDTATPEEEQGGNEQ*
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