NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079215_10166133

Scaffold Ga0079215_10166133


Overview

Basic Information
Taxon OID3300006894 Open in IMG/M
Scaffold IDGa0079215_10166133 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - NC Control
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1075
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001016Metagenome805Y
F004217Metagenome / Metatranscriptome448Y
F020315Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0079215_101661332F020315GGAGGVDETSLQLLKVMREQLGETTGRSVDAGAAAKSLGMYPGTLERSLLYLVRAGYIEEYADRAMSSRNGMFLITLQGIAAIDNA*
Ga0079215_101661333F004217GGAGGMERDDAEFRAANERIAAMAEELRKAELVRDRLEGLARLMDSYPEGHDMRARLDALHVDRALEGVNEDIRMLTDALQHPRGT*
Ga0079215_101661334F001016GGCGGVGPQDPKDVTRDTTRDLSGMAGELAALKADARHWLTSPEYAVLHLRLENAHAAVEAALIEARRRVRMNEERP
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