Basic Information | |
---|---|
Taxon OID | 3300006900 Open in IMG/M |
Scaffold ID | Ga0066376_10415902 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 768 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Southern Atlantic ocean | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F029469 | Metagenome / Metatranscriptome | 188 | Y |
F043443 | Metagenome / Metatranscriptome | 156 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066376_104159021 | F043443 | AGG | VLDNKLLKLKRKKLQRQILYLRTELEETQIIFRECLGDFDSEFGKYFKSDPTNKNKNENMDPVEFDIPEKDVNTVFRMIAQKTHPDKLVKEDTSTLTYKAKVNMYKEAQRSVENKDWSRVVEIAMELDIDVSNVKNDD |
Ga0066376_104159022 | F029469 | AGGAG | MSNKPEHTTYFREILRRLKEMEVEFRKAPKQPDDMFYGEMNDKIELMELPFPPAMFDKLSSDEKETLFIWLNRRNMPQA* |
⦗Top⦘ |