NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075426_10022665

Scaffold Ga0075426_10022665


Overview

Basic Information
Taxon OID3300006903 Open in IMG/M
Scaffold IDGa0075426_10022665 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4486
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001175Metagenome / Metatranscriptome756Y
F018903Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0075426_100226653F001175GGAGMRAVIAALACVVAACGPSNPCSGHQFDRLRRYSLPYAGHWVVARGDTLTFPDAPPMSDRFRLGDITLDTTTIVVDRECIFRGQIVFRAPRTETLAVSWFGQPEQAIVSGWPADLGPFAGLSLAPSGRDSVSGTILIDSKLGVQARPGMTARFVAGRAHRLSSHP*
Ga0075426_100226654F018903AGGAGLQVYAGSLKLPAMKSILWVVPICLIAACGSSDKSSQTVNRDTLTERQKDSMLAGSKIPGARAVGRAMTAADSMSARVHQSDTVARDTTEF*
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