NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075424_100420452

Scaffold Ga0075424_100420452


Overview

Basic Information
Taxon OID3300006904 Open in IMG/M
Scaffold IDGa0075424_100420452 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1426
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028279Metagenome192Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0075424_1004204521F028279N/AMSIYAEAKQIKRRADSVLEELFRSLFEEIDTDKLRAEVEAMREAAPDFKAKQHARTLARRTAIRCAAAGAVTGLPLGLAAIGTLGADLAYLMYQQFRLILGI
Ga0075424_1004204523F092677N/AMRVFSLVSALAAVVVIGCNGNSAQPDHQAEWRNVLEQKKAAARADATPRQKQLYADSVRAFVQKHPSHGRAAAVWERLQVEFANELSAIGRYQDAVGFYRAILDKDPLNDDARRGMAGAMAKLAVTRDKLLELEKGMSHHEVASILGKPVPGWTMTNQRSGVTMEAWYYRMRTGGLAAVYFRNGKVLAAEETSNAPLRRFDS*
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