NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075436_100189084

Scaffold Ga0075436_100189084


Overview

Basic Information
Taxon OID3300006914 Open in IMG/M
Scaffold IDGa0075436_100189084 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030272Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0075436_1001890844F030272GGAGVNKRTLYLAFFALLSFTTLLVFSQTSSQFPELDKNGKPVLPRPMPHLVYSPTDLAHSGVALPASIGGATPNTSIIRAGDATKMTVFASCTQNFDLVMSVYIADDQGQSSPNFILYNSYVIATNIASGAQQAFLATELAPTITSGTLGAPVRLPQLAVSFFEKNDVATAGTCTDRVIVGY*
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