NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070750_10001997

Scaffold Ga0070750_10001997


Overview

Basic Information
Taxon OID3300006916 Open in IMG/M
Scaffold IDGa0070750_10001997 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11346
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (80.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004771Metagenome424Y
F031249Metagenome183Y
F041168Metagenome160Y
F053549Metagenome141Y
F074757Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0070750_1000199713F053549GGAMKVGDLVKWENVLNDSMDHYRIDYGVVIKMSKTGHTTHSAQVLFNDGELAWFDTQQLIVVSPH*
Ga0070750_1000199717F074757GAGMYTWRQKIWFDKKPLVGLVVRVEDNPWQSKREVSTNEKTFYYVKWVQEGPGSRYGRTFHKTDGYFLRNDLKFVKKGDFK*
Ga0070750_1000199721F004771N/AMSTRPKIGDLVKMRTHETGLIGIVVDKHPKIPSALPLQFGIMWTGGSGTMDWEPEAWLEVVSSV*
Ga0070750_1000199724F031249AGGAGMTKVGDLVRVRTKHHGEMLGVVIEVTKDGVHVKPQKHPRNILALHQDVKVLVSV*
Ga0070750_100019973F041168GAGMKQAKVRRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDSDGKVSQFWHSGVIPKGTGVVCTHRERGMKHTFWTVTDPESELIGKVFIVGHTFKDRKEHEFEKFEYSNISPTLKYSILAEKPLTK*
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