NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070750_10016019

Scaffold Ga0070750_10016019


Overview

Basic Information
Taxon OID3300006916 Open in IMG/M
Scaffold IDGa0070750_10016019 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3858
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021207Metagenome220Y
F023748Metagenome209Y
F029779Metagenome187Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0070750_100160191F023748AGGAGGMSKEYKYTYRFSEQTVDTRYYKVESNTKLTQAEMQDLAWSVEMTEGETFTCDEGKATFEGTEFGDDAQYQMEEGEE
Ga0070750_100160194F029779AGGAGMNYEEKYKELCEALVGIDATERYSFEDILSYVYNLKKMEDKYYDSQKT*
Ga0070750_100160197F105326AGGMGQERNLTPTQHWELHQSLWYMLGCDMELKQKNKTTVIYIDKKRKRQYTYSTLGFIKEKKL*
Ga0070750_100160198F021207GAGGMSKRFKQVNIQHFATLVQEIDVSKYTQKEYVEIVEELYMGIFRHNTDGDFVVETLPNEKGNWRVHKPSATKEEVMELIKQGKVKWDKNAI*
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