NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0079216_10226348

Scaffold Ga0079216_10226348


Overview

Basic Information
Taxon OID3300006918 Open in IMG/M
Scaffold IDGa0079216_10226348 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - NC AS100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1048
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: North Logan, Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056041Metagenome138Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0079216_102263481F056041GGAGGMAVRGEEVASSIDAQVRESIEKMVAEIRSSVEDVRVLVDQQLKAALQSVQADVNSFSFLPQIKKSINELEEQIETERPMAAVAAAPASGGALGGALRVKSAVQIIERGRSQVDILNSL
Ga0079216_102263482F092677N/AMLLAMLASACGGQAPIDHQSEWRDVLKHKRAAVAPDASPDHKQVYADSVRAFVVKHPNHGRAVEVWQRLQLEFADELAGAGRYQDAIRIYRSVLTHHPENDHARSGLAVAAARLAVSREGLLALRKGMSHRQVAALLGKPVPGWSVKNRRAGATFEAWYYRTRTGSLAGVYFRDGKVFAAEE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.