NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070746_10178636

Scaffold Ga0070746_10178636


Overview

Basic Information
Taxon OID3300006919 Open in IMG/M
Scaffold IDGa0070746_10178636 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1021
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F020342Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0070746_101786361F001120N/AKSPINFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLF*
Ga0070746_101786363F020342AGGAMDLLTASCKSQSLSTYSTQLMSAVTDNINMFDRINLAACARRRASDNVLNSTRFEGEYDTARLWMKYRLVKYSTYSYIDED*
Ga0070746_101786364F001807N/AMTVLAIEHTEITDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDHLDPQWQ
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