Scaffold Ga0098060

Basic Information
Taxon OID	3300006921 Open in IMG/M
Scaffold ID	Ga0098060_1000828 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006921 Open in IMG/M

Scaffold ID

Ga0098060_1000828 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13172
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (87.80%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

13172

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (87.80%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-16.21

Long. (^o)

-76.63

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F008590	Metagenome	331	Y
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y
F017285	Metagenome	241	Y
F018286	Metagenome	236	Y
F070089	Metagenome	123	Y
F074757	Metagenome	119	Y
F094548	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100082810	F014672	GAG	MEKFRPGDLVRIKDGTHQDEIPDHRVGMIVEAGETSKSYTKAFTVVFLGTDVRLKFHAMFLEHFTTP*
Ga0098060_100082813	F012507	N/A	MWTDKLKIGDLVWSRRDGKPAIVLASVETARAKYGDLVNKRMEFKLHVDGQQGWLDEVKLRALYKIP*
Ga0098060_100082816	F017285	AGGAG	MSYNGTVRCSHCYRTGHNKRKCPELSEQIKGQYEGNTRMAAKEREAGNENDAQWYDDRAEHHRQLYLKRTKIDLATGEKVSNKAAKAARMKKVTCGYCHQRGHTRRSCKAVKVDKQVFVEETRRARIAALETARETGVGLGSMIPIRSAGYDVDGEWRSNMLTLRYIKSIAWDTCTSSAPFLAAYHVEARKIAALNQARWTSCDQIAKLVQVHDAALRYAAAESEPAPMSSLVPTLDPPKGWLQPTEQSLAAAIKREFPTTGTKHNKQRGYEYTYPSDLTREVIKDLGLAEHYDHVNWA*
Ga0098060_100082819	F004771	N/A	MRNRPRVGDLVKMHTHDTGLVGIVIDRHPKAISTTPAQVGIMWTGGSGKMDWEPEAWLEVVSESR*
Ga0098060_100082823	F074757	GGAGG	VRPGDLVTLSSYCLQKADMWTWRRKIWKEKKPLVGLVVRVEDNPWVGKRQCSKNERFLYYVNWMQDGPGSRYGKTYHQTDGYFLRNDLKHVRDGEFD*
Ga0098060_100082825	F005547	AGGAG	MKVWVMQGSYEGEMFSSVHFTQKGCALACIADITEFHGIDDDETALSVMNNTYHGETEEYKEPIEWDQEKLKEMSSKDLWKIFSDWTEISWERMSDRSYHIDANAMEIQA*
Ga0098060_100082827	F070089	N/A	VKVGDLVKLESALNDSMDHYSVEHGLVVQISKTGHDTLSAQVLFNDGETWWVDSGRLEVLSEGR*
Ga0098060_10008283	F094548	AGGAG	MIKVGNMVQSKYVLSDGKEGNLGLVMETRNTAEEASAVAHIYYPKTRTFGWVHTKDMKVVA*
Ga0098060_100082830	F018286	AGGAG	MQMLTTFILVGMIDSFDAHFATVELNTTPASNGGPATAVMPVGAFPCEIYEGKVFYVVKLHEEQDATIVCQKDVEDERRRRKAD*
Ga0098060_10008286	F008590	GGAGG	MQVGDLVTYWYQRPRWRKGQSVHVGLVIENGKFTGNRDVKVLWKGEPDPQTECSQHLSLVDDSLTT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098060_1000828

Overview

Ecosystem & Geography

Associated Families

Sequences