NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098060_1005099

Scaffold Ga0098060_1005099


Overview

Basic Information
Taxon OID3300006921 Open in IMG/M
Scaffold IDGa0098060_1005099 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4583
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024567Metagenome / Metatranscriptome205N
F031509Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0098060_10050991F024567N/APISPQFNLTLDVNTDDQTLALLTALGLTEKRIMLVGFDISSPKVLKDLRSVIMLHPDMKFYFLCNPPKTKQLDYCSNAECVLFKDMEKLK*
Ga0098060_10050992F031509GGAMEKPTTNINYVIKVLWPPHCQNRGLKVLEERADIVKEMNGMRSKIENFLKASCSGQFKVSDEYDMKGFNVGFEQGPDVYNFILEQATIGYEVDREIGRYNIFSDKYIKHQLLYTAKGIVIG*
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Institute for Fundamental Biomedical Research
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