Basic Information | |
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Taxon OID | 3300006924 Open in IMG/M |
Scaffold ID | Ga0098051_1010024 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2901 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015659 | Metagenome | 253 | Y |
F020445 | Metagenome / Metatranscriptome | 224 | N |
F026438 | Metagenome | 198 | N |
F046315 | Metagenome | 151 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098051_10100242 | F020445 | AGGA | MSDYDNSAALWKRTPRDTDVAGKKYPAYNGNITVGGKKMNLAAWLNTEKSKEGQPDISLKISEIVAKEDVSF* |
Ga0098051_10100243 | F015659 | AGGAG | MKNGLAEAIKKFRDSIDDKDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKELPKPKTNGKTKTPKILADEWIEVLKKTATHSVSVGKFEQNLNPLRQEYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK* |
Ga0098051_10100245 | F026438 | AGG | MICLYMANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKIAEVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWKDEIEQVLWTPPVKTYWLMYIDLVSKDLLGDLKNKFGNATLTKTKGWTYTNVKCPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQENCEDLSQENLDKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAKEQIDRLLKHYE* |
Ga0098051_10100246 | F046315 | N/A | MNNTLNKKLLEYSLKSGYNDEFIKGYMKRNNLLPKEFTFRKESLDLILKRYNKKIIDFVRDTYLPKEQKNKLAQISKILNPKKNAPHYYTINDLAYDLSTWINNFNTSNVSITPQFFMGENVQIECIGELFGNGQIGLHKIKDRHKINIHPKYTSFQAIECQTEHKRGLMMLFQPTKNIDRNVNNRSAICQDKKTKVIWFGFLEPQSNGKFNILDKSQSTGKTIGKLAENIQLSWCAEVKAAYYPNIYNI* |
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