NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098051_1055111

Scaffold Ga0098051_1055111


Overview

Basic Information
Taxon OID3300006924 Open in IMG/M
Scaffold IDGa0098051_1055111 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1095
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032856Metagenome / Metatranscriptome179N
F034391Metagenome / Metatranscriptome175N
F070144Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0098051_10551112F034391N/AMTNYSKQYDNKLLEGILDHMANELKGEFGFETLDAEDKLDVIALFVDNPTSYETPYLHSIETTDTEVVSSRKKSNVEILQDLSNYTRYDG*
Ga0098051_10551113F032856N/AMMDEAKYRYWSTVYTDYLIEDVSDELVNEYETDNPTNEANANDEFVVEEDYVMQLVEYWIDNYTMGNPKCKEIIDNLSYDIFEDDDEFGVRPDSWKQAGVWALDHAIHNNDNIQAIYKLTNEKLQKLWKK*
Ga0098051_10551114F070144N/AMEKVNPEMEGENWSVKKHTVHKDKYVARHINIWGSEAHTVDSLIEAMDIIDKFKNQEDWILQKREEFGDYMWNNDDFRKD
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