NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098051_1083920

Scaffold Ga0098051_1083920


Overview

Basic Information
Taxon OID3300006924 Open in IMG/M
Scaffold IDGa0098051_1083920 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059453Metagenome134Y
F078825Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0098051_10839202F059453AGTAGGMKSCKKCMAGESRVRLMSNGLCEECEHDRAWNNKGEYMKQYNKNQRMLMRKNVAQEVNRKWKEKYGDASPEEVASYQ*
Ga0098051_10839203F078825N/AVMPNMDELMALPYMERINNDINAAYGVMPIVTGSTAGVGGLNAEGEQISLFDRTVLETQQCLEMGFLRPLMKLMGIKTWKVKFADINVKNEATHLANMLQKANIITVLNKLGIKATLDKDGNLKLPDEPQVTVTDDKPEVGALKP*
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