Scaffold Ga0098050_1042087

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098050_1042087

Scaffold Ga0098050_1042087

Overview

Basic Information
Taxon OID	3300006925 Open in IMG/M
Scaffold ID	Ga0098050_1042087 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1218
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000724	Metagenome / Metatranscriptome	919	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098050_10420871	F000724	N/A	MPKKEKIWMMGNKGPTGPWVWHAWIKGSKKPMRIVAFDLDHIKCQLEGKTVIKAVKQPEEKDEFSSMPLGPKGSLVNRPADYDKGFKILREWIDQNGGPPEEIRVKLRELYIDYDRAPRKTTRYSVRKKKRY*

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