Scaffold Ga0098050_1094399

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098050_1094399

Scaffold Ga0098050_1094399

Overview

Basic Information
Taxon OID	3300006925 Open in IMG/M
Scaffold ID	Ga0098050_1094399 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	767
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024653	Metagenome	205	Y
F041144	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098050_10943992	F041144	AGGAG	MISDAITTVGFALQSHVNTCYHEDTEENRAERVELTLAWSIIKKHLKENEE*
Ga0098050_10943993	F024653	AGGAG	MTRDIDTIPTTRRHIVSYKIYAEWSDNPKMVQLDHEMDGHLENTFNDWLRDIEDEENV*

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