Scaffold Ga0098057_1046271

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098057_1046271

Scaffold Ga0098057_1046271

Overview

Basic Information
Taxon OID	3300006926 Open in IMG/M
Scaffold ID	Ga0098057_1046271 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1071
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)		Depth (m)	250
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099441	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098057_10462711	F099441	N/A	CGWNRLESWLWGGDLFLQERITRKLGVTRMILTDLDIKGESKTPQGLNVHLVESDDVTYMWDDVLPLIRISLRFAEGELEPEDLVVHLDTGQMNLWVAMEKGEVIAAMITEIITYPRKRILRVITLASKDGHGMDNWYDFLPMVEGFAINNGCSALEAWTRKGMARRLKDWKHSYSVITKDLKQRMQ*

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