Basic Information | |
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Taxon OID | 3300006927 Open in IMG/M |
Scaffold ID | Ga0098034_1002921 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5931 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 160 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F029467 | Metagenome / Metatranscriptome | 188 | Y |
F030551 | Metagenome / Metatranscriptome | 185 | Y |
F048567 | Metagenome / Metatranscriptome | 148 | Y |
F054097 | Metagenome / Metatranscriptome | 140 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098034_100292111 | F048567 | GAGG | MATKKTIETKNDKKDKISIVEIIQDIDARLTHIEDMYMDNRELIVKLVKQGNTVVEFLKDFQIEELNPEDLEIGIGLPPLPDNEKRIDRTTAMKELIDDILERHSDLKEFEDELKKHKNKITPGQVGEA* |
Ga0098034_100292112 | F054097 | GGGGG | MVKYILIMFVFGTFLLASDSQPETKPTSTITINDDSEKTFARRRGGKGNKGRRRGGNGLR |
Ga0098034_100292114 | F030551 | GGAGG | MKNSIRNLIITAALVSGILGITNAQSVSGEFSSDVTFGDATAFSSPYTGLNISGDGWELSTNLSDGNVNVEEAKYNWAISDAITATFGSQAE |
Ga0098034_10029217 | F029467 | N/A | MEETKKGQTEGKKMIDDFMHVLENYTDANLHSVAARKVIAEALVQHMCDHHIVTFTDYEAAVNDPNMKEFIKNCGCKPTQEDIPVKRGL* |
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