NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098034_1057157

Scaffold Ga0098034_1057157


Overview

Basic Information
Taxon OID3300006927 Open in IMG/M
Scaffold IDGa0098034_1057157 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1144
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049042Metagenome / Metatranscriptome147Y
F080148Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0098034_10571571F049042N/AMAEFQALQTATAEWKPHQIAKAGDIASMAKAAGALAETVKETLSLASAGMEVVKLLAQLQNINPLLIALDALADEVLIAIQNIKEAGFWYLYVDPYFIRNVAAYPAFTYGFEQLRNPAGDRLWLAKDTQPPPLGTGEFKQTTTTPTQAQLDEQEVIPQLATPRKLVAGGYNPYAGAGVSDPLASISPYPKFSVKQVIEEFTKAFDDEGDVPRYRRVGG
Ga0098034_10571573F080148N/AEIDARIGVPVYGNSTSTGTTPATRGNPPCIRVKTIPTANTTSGYVPYGRAIYDNVNLLLGQDVDILGGIIKDIESLTDLVQLVKNTRNKYEIYNGRAKEY*
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