NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098041_1015492

Scaffold Ga0098041_1015492


Overview

Basic Information
Taxon OID3300006928 Open in IMG/M
Scaffold IDGa0098041_1015492 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2510
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.401Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006892Metagenome362Y
F026438Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0098041_10154924F026438N/AMANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKIAEVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWKDEIEQVLWTPPVKTYWLMYIDLVSKDLLGDLKNKFGNATLTKTKGWTYTNVKCPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQENCEDLSQENLDKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAKEQIDRLLKHYE*
Ga0098041_10154925F006892AGGMSDMGIIKPLRDRVRDLEVINEAHQKKNGQLRVEIQDKDKLIKELEEKINNPTKKMREQGEL*
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