NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098041_1033897

Scaffold Ga0098041_1033897


Overview

Basic Information
Taxon OID3300006928 Open in IMG/M
Scaffold IDGa0098041_1033897 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1663
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.401Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026714Metagenome197N
F043623Metagenome156N
F054920Metagenome139N
F056144Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0098041_10338971F054920N/ATCDDDDLDKEYGMYYGNLEFDPLDIMESHSGHTKMFHKENGKWQQL*
Ga0098041_10338972F043623N/AMFKRIKKAEDDPTLEQAQKFVKGWVERLVLSTGTLLVDEEARMKRGIKKNKAASFLANKDGYPEILGPAIFIPHEVKSEWY*
Ga0098041_10338973F026714AGGAMASTYKKLTVYLNEEQEKVLTDFDLKIIDKNDFDLLHYTVGIISKRLAETNHKMITDVDPNTCDPATLQYSSKTIG*
Ga0098041_10338975F056144AGAAGMIKNIYRGYDIVEYDTQWKVELEGKSIVTFDKEEGVSGEASCMCEIDRIYRNDRKEIDANIQRVDAQVKLDNNIKKARNNGS*
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