NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098041_1059184

Scaffold Ga0098041_1059184


Overview

Basic Information
Taxon OID3300006928 Open in IMG/M
Scaffold IDGa0098041_1059184 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1237
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.401Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005743Metagenome / Metatranscriptome391Y
F026152Metagenome199Y
F033221Metagenome / Metatranscriptome178Y
F058106Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0098041_10591841F026152AGGAMKKLKTPKFWTAKAWAEHMLHISGFTDAKEVKSVQSNTRRKVSRKSNKSKQSSKA
Ga0098041_10591842F005743AGGAGGMSRNLIVYKVDYANRHEDYSITTGRFVRTKRIVMTPDEVDQTNGYWRNHRNVEKKFAMQMMGKEDAYWDSKYRVLRIRKAK*
Ga0098041_10591844F058106AGGAGGMTQSTFQSYMDTKSPEERKQYVDEQIALGNPKYKDRNTWLKENADKIRISKLEAQVNEILAKLPK*
Ga0098041_10591845F033221GGAGMITYTIEQQIESDTEKYPNYYLNVYQSPITENSILAERDKEAKRIQQSFVNNVKQSLINNNK*
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