NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099825_1021985

Scaffold Ga0099825_1021985


Overview

Basic Information
Taxon OID3300006941 Open in IMG/M
Scaffold IDGa0099825_1021985 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - Siratro red BW
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4210
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057148Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0099825_102198510F057148N/AMYTTNQLFQVGKIHKQ*FNMGFGVMNVANNFDVHDQPLI*
Ga0099825_102198511F057148N/AMYTTNQLFKVGKTHKQ*FNMGVGVTNVANHLDVHD*
Ga0099825_102198512F057148AGTAGMYTTNHLFKI*KTHSQQFNMGVGVMNVANHLDVDD*
Ga0099825_102198513F057148N/AMYTNNQLFKVGITHRQ*FNKGVGVMNVANHIDVYD*
Ga0099825_10219852F057148AGGMYTTNQ*FKVGKTHTQ*VNMGVGVMNVANELDVHD*
Ga0099825_10219854F057148N/AMYTTNQLFKVGKNHKQ*FSMGVGVMNVVNHLDVHD*
Ga0099825_10219855F057148N/AMYTTNQLFNVGKNHKQ*FNMGVGVMNVVNHLHVHD*
Ga0099825_10219856F057148N/AMYTTNQLFKVGKTHTQ*FNTGVGVMNVAHHLDIHDKAVI*
Ga0099825_10219857F057148N/AMYTTNQLFKVAITHTQ*SNMGVEVTNVANHLDIHD*
Ga0099825_10219858F057148N/AMYTTNQLFKVGITHTQ*FNMGVKIMIVANHLDVHDQPLI*
Ga0099825_10219859F057148N/AMYMTNQLFKVGKIHTQ*FNMGVGVMNVANHIDVHD*
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